• A Bayesian Model for Overlapping Clusters from Distance Data.

      Sandhya Prabhakaran and Julia E. Vogt.
      All of Bayesian Nonparametrics Workshop in Neural Information Processing Systems Conference 2018 (NIPS 2018).

    • Introduction to Machine Learning in Digital Healthcare Epidemiology.

      Jan A. Roth; Manuel Battegay;  Fabrice Juchler;  Julia E. Vogt * and Andreas F. Widmer*.
       
      *Shared last authors.  Infection Control & Hospital Epidemiology, 2018.

    • Gene expression analysis of biopsy samples reveals critical limitations of transcriptome-based molecular classifications of hepatocellular carcinoma.

      Zuzanna Makowska, Tujana Boldanova, David Adametz, Luca Quagliata, Julia E. Vogt, Michael T. Dill, Mathias S. Matter, Volker Roth, Luigi Terracciano, Markus H. Heim.
      Journal of Pathology: Clinical Research, 2016.link

    • Probabilistic Clustering of Time-Evolving Distance Data.

      Julia E. Vogt, Marius Kloft, Stefan Stark, Sandhya Prabhakaran, Sudhir Raman, Volker Roth and Gunnar Rätsch.
      Machine Learning Journal, 2015 DOI 10.1007/s10994-015-5516-x. link

    • Unsupervised Structure Detection in Biomedical Data

      Julia E. Vogt.
      IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI:10.1109/TCBB.2015.2394408, 2015.link

    • Large-Scale Sentence Clustering from Electronic Health Records for Genetic Associations in Cancer

      Melanie F. Pradier, Stefan Stark, Stephanie Hyland, Julia E. Vogt, Gunnar Rätsch, and Fernando Perez-Cruz.
      Paper + Spotlight Talk at Machine Learning for Computational Biology Workshop in Neural Information Processing Systems Conference 2015 (NIPS 2015). link

    • Bayesian Poisson Factorization for Genetic Associations with Clinical Features in Cancer

      Melanie F. Pradier, Theofanis Karaletsos, Stefan Stark, Julia E. Vogt, Gunnar Rätsch, and Fernando Perez-Cruz. Accepted Abstract at Machine Learning for Healthcare Workshop in Neural Information Processing Systems Conference 2015 (NIPS 2015). link poster

    • Pegylated IFN-alpha regulates hepatic gene expression through transient Jak/STAT activation.

      Michael T. Dill, Zuzanna Makowska, Gaia Trincucci, Andreas J. Gruber, Julia E. Vogt, Magdalena Filipowicz, Diego Calabrese, Ilona Krol, Daryl T. Lau, Luigi Terracciano, Erik van Nimwegen, Volker Roth and Markus H. Heim.
      J Clin Invest doi:10.1172/JCI70408, 2014.link

    • Malaria Haplotype Frequency Estimation.

      Leonore Wigger, Julia E. Vogt and Volker Roth.
      Statistics in Medicine: 04/2013; DOI: 10.1002/sim.5792 link

    • Structure Preserving Embedding of Dissimilarity Data.

      V Roth, TJ Fuchs, JE Vogt, S Prabhakaran, JM Buhmann
      Similarity-Based Pattern Analysis and Recognition, 157-177 link

    • P139: Continuous exposure to PEG-IFN-Alpha only transiently activates JAK-stat signalling in human liver.

      Makowska, Z and Dill, MT and Vogt, JE and Filipowicz, M and Terraciano, L and Roth, V and Heim, MH.
      Cytokine 59(3):563–564, 2012 link

    • Automatic Model Selection in Archetype Analysis.

      Sandhya Prabhakaran, Sudhir Raman, Julia E. Vogt and Volker Roth.
      Pattern Recognition: Joint 34th DAGM and 36th OAGM Symposium, Lecture Notes in Computer Science, 2012 link

    • A Complete Analysis of the l_{1,p} Group-Lasso.

      Julia E. Vogt and Volker Roth.
      ICML 2012: Proceedings of the 29th international conference on Machine Learning. link

    • Interferon-Induced Gene Expression is a Stronger Predictor of Treatment Response Than IL28B Genotype in Patients With Hepatitis C

      Michael T. Dill, Francois H.T. Duong, Julia E. Vogt, Stephanie Bibert, Pierre-Yves Bochud, Luigi Terracciano, Andreas Papassotiropoulos, Volker Roth and Markus H. Heim.
      Gastroenterology, 2011 Mar;140(3):1021-1031.e10.
      Janssen Virology Award 2011 for HCV link

    • The Group Lasso: l_{1,\infty} Regularization versus l_{1,2} Regularization.

      Julia E. Vogt, Volker Roth.
      Pattern Recognition: 32-nd DAGM Symposium, Lecture Notes in Computer Science, 2010. link
      DAGM prize

    • The Translation-invariant Wishart-Dirichlet Process for Clustering Distance Data.

      Julia E. Vogt, Sandhya Prabhakaran, Thomas J. Fuchs, Volker Roth.
      ICML 2010: Proceedings of the 27th international conference on Machine Learning. link
      Best paper runner up